Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015885360.1_cds_XP_016439347.1_34911
CDS Infomation

[gene=LOC107765236] [db_xref=GeneID:107765236] [protein=pentatricopeptide repeat-containing protein At3g50420-like] [protein_id=XP_016439347.1] [location=complement(join(48424..50048,50174..50195))] [gbkey=CDS]
Sequence

ATGTTCAGGCCTCAAGAATCAGAGAAAGTTTTTTGCTCCATGCAAGATAAAGATTCTGTG
GCTTGGAATACCATATTTTTTGGATATTTGGAAAATGGTAGGACCATGGAAGGCCTTCAG
CTATTTGACAGCATGTTGACTGCTCGAGTTAATCCGACAAATTTCACTTATACAACGCTG
TTGAGTGCTTGTAGCAGGTTGAGAGATGGTCTTGCAGGGGAAGCAACTCATGTTAAAGTA
ATTGTTTCCGGGATTGCACCAGATTTGCCCTTGTACAATGCGCTGCTCGACATGTATTTT
AGTTGTGGTGATAATGACGCAGCTTTGAAAGTCTTCGGAAAAATAAAGAAACCAGATCTG
GTATCTTGGAATTCAATGATTTCTGGATATGCAAACAATGGAGATGGAGAGATGGCAATG
ACTATGTTTGTCCAATTTCGACAATCATCCCTTTTCACACCTGACGAGTATACATTTGCA
GCTGCAATTTCTGCTACAAGAGCATTTCCAGCAGCTGATTATGGGAAACCACTCCACGGC
CAAGTTGAGAAAATGGGGCTCGGTCAAAGTGTATACATTGCAAGCACACTGATATCGATG
TACTTTTACAATGAGGAAGTTGAGTCTGCTCAACGGATTTTCATTAGCATCCTGGAGAAG
GATGTTGTCCTGTGGACTGAGATGATTGCTGGACATTGTACGAAAGGTAATGCTGAGAGC
TCTATTAGGTTTTTCCATGGACTGTTACAGGAAGACCACAAGGTTGATGAATTTACTCTT
AGCAGTGCCTTAAGCGTGTGCGCTGAAGCGGCAAGTATGAAGCAGGGTGAAATGATTCAT
TCCCTGGCTATCAAAACAGGCTATATAGCTGAGATGACCGTTTGTGGGAGTTTGGTTGAT
ATGTATGCTAAAATAGGAAACCTTGCAGCTGCAGAGCTTACGTTTTCCTGTGTAACCACG
CCTAATCTAAAATGCTGGAACTCAATTCTCGGAGGATATGGTTACCATGGGAAGGCAGAG
GATGCATTTAAGGTGTTCAATGATATTTTACAACATGGCCTAAAACCAGATCCTGTAACA
TTTATCTCTCTGCTTGCTGCCTGTAGCCATTGTGGATTGGTCAACCAGGGTATTTTCTTC
TGGAATTACATGAAAGGTATTGGTTTAAAACCAAGCCTTAAGCATTATTCTTGCATGATC
ACTTTGTTGAGTCGAGCTGGTTTGCTAGAGGAGGCTGAGAATGTTACAATGGAATCACCT
TTTGGTGATGAATGTCTTCAACTATGGAAAATTTTACTGAGCTCTTGTGTAAGTAAAGGA
AACTGGAGCATAGGTATACGTGTTGCGAAGCAGATTTTGAGGATGGATGCAGAAGACAAT
GCATCAAATGTATTGCTCTCAAACTTTTTTGCTTCAACTGGTAGGTGGGATGGTGTTTCA
GATATCAGGAGAAAGATAAGGGAATTGATGTTGGAAAAAGATCCTGGTCTGAGCTGGTTA
GAGCTTGTAAACGATATCCATGTGTTCTCTTCTAGTGATCATTCACATCCACAGTATGAT
GAAATAAGAGCTGAGTTGCCTAGATTGCAAGGGAACTTAACACAGACAGAAGCAGATCAA
TTGATGCTAGATGCAGTGGCTGTGTAA

Peptide Sequence

PEP ID

XP_016439347.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At3g50420-like [Nicotiana tabacum]
Sequence

MFRPQESEKVFCSMQDKDSVAWNTIFFGYLENGRTMEGLQLFDSMLTARVNPTNFTYTTL
LSACSRLRDGLAGEATHVKVIVSGIAPDLPLYNALLDMYFSCGDNDAALKVFGKIKKPDL
VSWNSMISGYANNGDGEMAMTMFVQFRQSSLFTPDEYTFAAAISATRAFPAADYGKPLHG
QVEKMGLGQSVYIASTLISMYFYNEEVESAQRIFISILEKDVVLWTEMIAGHCTKGNAES
SIRFFHGLLQEDHKVDEFTLSSALSVCAEAASMKQGEMIHSLAIKTGYIAEMTVCGSLVD
MYAKIGNLAAAELTFSCVTTPNLKCWNSILGGYGYHGKAEDAFKVFNDILQHGLKPDPVT
FISLLAACSHCGLVNQGIFFWNYMKGIGLKPSLKHYSCMITLLSRAGLLEEAENVTMESP
FGDECLQLWKILLSSCVSKGNWSIGIRVAKQILRMDAEDNASNVLLSNFFASTGRWDGVS
DIRRKIRELMLEKDPGLSWLELVNDIHVFSSSDHSHPQYDEIRAELPRLQGNLTQTEADQ
LMLDAVAV

Transcript Sequence

Gene sequence data has not been registered.